http://lds.org/gospellibrary/pdfindex/0,7777,579-1,00.html

Use HTTrack to copy the online scriptures to your computer. You can find it at http://www.httrack.com/.

You’ll want to scan http://scriptures.lds.org/en/ and under “set options” use the following scan rules:

+*.png +*.gif +*.jpg -*.css -*.js -mime:application/foobar
-*/*listen*
-*/*server*
-*/*jst*
-*/*helps*
-*/*/gs/*
-*/*biblemaps*
-*/*chmaps*
-*/*biblephotos*
-*/*chphotos*
-*/*search*
-*/*options*
-*/*help*
-*/*-*
-*/*/dc/*/**
-*/*/bd/*
-*/*/tg/*
-*/*/in/*

That will leave only the scriptures (no index, dictionary, photos, guides, etc.) in order to make the final pdf a manageable size. Also under limits, set max mirroring depth to 4. That will prevent all the footnotes from being copied. The footnote links in the verses still work, they’ll just send you to the online footnotes in your browser. The other links will move you around the pdf.

That should take an hour or so to download. Then you can use adobe acrobat (or the trial version of acrobat if you don’t have it) to make a pdf of the site that is now located on your hard disk. After opening acrobat hit ctrl shift O and enter the location of the index web page. Select “get entire site.” You can change the font size, and formatting of the pdf you’ll make under settings. It will take 45 min or so for acrobate to make your pdf.

The pdf I made is just under 45 MB. Now I can use my tablet to read my scriptures and save all the ink highlighting and annotating I make (I use PDF Annotator from GRAHL software). Navigating through the scriptures is very quick within the pdf. If you click on a link that is outside of the pdf (like a footnote) it will open your web browser so you can still access that info.

Hope this helps!